Eggless Whole Wheat Chocolate Cupcakes (With vegan Option)
Chocolate cupcakes don't have to be loaded with eggs and white flour to taste amazing. Eggless whole wheat chocolate cupcakes give you plenty of rich flavor and a moist, fluffy texture using simple, wholesome ingredients.

This recipe skips both eggs and refined flour, making it great for anyone looking to eat a bit healthier without giving up treats. You also get a vegan option included, making these cupcakes perfect for those who want dairy-free and plant-based choices.
Baking with whole wheat adds more fiber and nutrients while keeping the chocolatey goodness you crave. If you're after cupcakes that taste great and fit into a wider range of diets, you're in the right place.
Eggless and Vegan Baking: Purpose and Considerations
There are many reasons people bake without eggs and dairy. Some people have allergies, others choose a vegan or plant-based diet. Sometimes, it's about ethical beliefs regarding animal products. No matter the reason, making the switch isn't as hard as it might seem-and you don't have to miss out on great taste or texture.
People skip eggs and dairy for:
- Allergies: Many kids and adults can't eat eggs or dairy at all, so eggless, dairy-free recipes open the door for everyone.
- Lifestyle Choices: Plant-based or vegan diets avoid animal products entirely, including eggs and milk.
- Ethical Reasons: Some prefer not to use animal-derived ingredients due to animal welfare concerns.
I bake a lot of cakes with and without eggs, but I do prefer eggs as it becomes easier when you eat. But it was a necessity that day. My son wanted to bake chocolate cupcakes and I ran out of eggs. It is then I decided to make this Delicious Eggless Whole Wheat Chocolate Cupcakes.

Baking with Kids
I am just sharing this recipe here. From start to finish all was done by my 9 year old. He wanted to do all by himself, from measuring, to mixing, to adding in molds and even keeping and removing from oven. It becomes a bit messy when they are at work. The way they mix, the batter splashes all around, but it's fine. They have to learn and we have to ignore the mess.
He has earlier baked this Chocolate Chip cookies and they turned out awesome. What I did this time was to ask him only to even clean the dishes with water and put it aside so I can clean it later. He was like what, I said yes that is the number one cooking rule. Keep your counter top clean. Do it while your stuff is cooking or baking. And he did at least 50 perc.😊
I am not writing all this to brag about my son, but to tell my readers to let your kids learn. A girl or a boy does not matter. Let them start at young age and they would be ready to fly.
Today the 4th August 2025, I am updating this post, and he is 15 now. I have kept the transcript and the images same as I do not want to loose this memory.

So coming to today's Eggless Whole wheat Chocolate Cupcakes recipe. I have changed my original recipe. I use to add flax egg in this, but realised it is not needed. I have baked this without the flax egg and it worked fine. I will accordingly update the recipe. However To make eggless and vegan baking work well, keep these tips in mind:
- Choose the Right Egg Replacement: Common vegan options like unsweetened applesauce, mashed banana, or plant-based yogurt bring moisture and help bind the batter.
- Balance Moisture: Without eggs, keep an eye on how wet or dry your batter looks. Whole wheat flour soaks up more liquid.
- Flavor Boost: Use ingredients like vanilla, cocoa powder, or espresso to make sure your cupcakes stay rich and chocolatey without the help of eggs or dairy.
Eggless whole wheat cupcakes can be incredibly moist and flavorful. They tend to have a softer crumb and don't sacrifice on richness-especially with chocolate in the mix. Skipping eggs and dairy not only addresses allergies and ethical needs, but also leads to treats you feel better about serving and enjoying.

Cupcakes without Buttercream
I do not always decorate my cupcakes with buttercream. Especially when I am making it for my kids or for snacking it at home. They do not need it and only the cupcake is enough to satisfy their sweet cravings.
Less Sugar in Cupcakes
I always add a little less sugar in my cupcakes. But you will not feel it. Also whenever you eat cakes or cupcakes let it cool completely. The best is to eat after a few hours or next day when the flavours develop. Also keep in mind that the whole wheat cupcakes always tend to taste a less sweet as compared to all purpose flour.
We had this cupcakes when they were a bit warm. Read it as being impatient. So, Obviously we felt a bit less sugar that time. But, after a few hours, when the flavours developed, this Eggless Whole Wheat Chocolate Cupcakes were just perfect. I remembered one of the mava cakes we use to get from a famous bakery in my town when we were small. Needless to say the cupcakes were a hit.

Storage, Shelf Life, and Serving Suggestions
Keeping your eggless whole wheat chocolate cupcakes tasting fresh isn't tricky, but a few simple habits make a real difference. Whether you plan to enjoy them the same day or freeze extras for later, getting storage right locks in moisture and chocolate flavor. Planning to serve them for a party or just as a sweet afternoon treat? You'll also find a few creative, crowd-pleasing ways to present them.
Storing Fresh and Frosted Cupcakes
Cupcakes dry out faster than whole cakes, so smart storage is key to keeping them soft. How you store your cupcakes depends on whether they're plain or frosted:
- Unfrosted cupcakes: Let them cool completely, then place in a single layer inside an airtight container. Store at room temperature for up to 2 days. If you refrigerate it, you can keep it for 4-5 days or more.
- Frosted cupcakes: Cupcakes topped with vegan ganache or any frosting stay best when stored in a container tall enough to avoid smudging the tops. Arrange in a single layer, cover, and keep at room temperature if you'll eat within a day. For longer storage (2-4 days), pop them in the fridge, but bring to room temperature before serving for the best texture and flavor. Vegan frostings, especially coconut-based ones, hold up better than dairy when chilled.
Quick Tip: If you're in a humid climate, always keep cupcakes inside an airtight container to prevent them from getting sticky or moldy.
Freezing and Thawing Tips
Freezing lets you enjoy a fresh cupcake anytime with almost no extra work. Freezing works beautifully for both plain unfrosted cupcakes. It is said that it also works for frosted cupcakes. However I have not done that and cannot coment.
For Unfrosted Cupcakes:
- Cool completely on a wire rack.
- Wrap each cupcake tightly with plastic wrap.
- Place wrapped cupcakes in a freezer-safe bag or container.
- Label with the date. They'll stay fresh for up to 2 months.
Best way to thaw:
- Take the cupcakes out of the freezer and remove the plastic wrap.
- Let them stand at room temperature for 1-2 hours [unfrosted].
- For a fresh-baked feel, microwave an unfrosted cupcake for 10-15 seconds or pop it in a warm oven for a few minutes.
Extra tip: If you like to batch-bake, keep plain cupcakes in the freezer and only frost before serving. This keeps both the cake and frosting at peak freshness.

Eggless Whole Wheat Chocolate Cupcakes (With vegan Option)
Ingredients
- 1 and ½ cups cup Whole Wheat Flour 190 grams, (One can use Plain or All purpose Flour)
- ½ cup Cocoa Powder 40 grams
- ¾ cup Dark Brown Sugar 150 grams
- 1 teaspoon Baking Soda
- ½ teaspoon Salt
- 1 cup Milk 240ml (Vegans can use Soy or Almond milk)
- 2 teaspoon Vanilla Extract
- ⅓ cup Vegetable Oil or any flavourless oil 80ml
- 1 tablespoon Vinegar
- 1-4 tablespoon Room Temperature Water Only needed if the batter is very thick
Instructions
- Preheat the oven to 350°F (180°C) and line a muffin or a cupcake tray with cupcake liners. Set aside.
- Sift the flour and cocoa into a mixing bowl.1 and ½ cups cup Whole Wheat Flour, ½ cup Cocoa Powder
- Add the brown sugar, baking soda, salt and mix together.¾ cup Dark Brown Sugar, 1 teaspoon Baking Soda, ½ teaspoon Salt
- Add the milk, vanilla, oil, and vinegar and mix in.1 cup Milk, 2 teaspoon Vanilla Extract, 1 tablespoon Vinegar, ⅓ cup Vegetable Oil or any flavourless oil
- You can use a hand whisk or a hand blender.
- Do not over mix. If the batter is too thick, add 1 tablespoon of water at a time.1-4 tablespoon Room Temperature Water
- One should be able to pour the batter easily with a laddle. Check the video for the consistency.
- Divide the batter evenly into the cupcake moulds.

- Place into the oven and bake for 20-25 minutes or until a toothpick inserted into the center of one of the cupcakes comes out clean.
- Let them cool for a few minutes in the cupcake tray itself.
- After that remove them on a wire cooling rack.
- You can decorate them with chocolate frosting or just enjoy as is.
Notes
- If your oven is very hot, do reduce the temperature by 5-10 Deg.
- Oven time varies for baking , do keep an eye after 15-20 minutes.
Sharing this with
Today I am sharing this with

Earlier I have shared this with "Follow the Italian Meal Structure" , where In I have opted for "Merenda"(Afternoon Snack). Merenda is generally consumend by children and adults as an after school or a mid-afternoon snack. This may include a wide variety of foods. Merenda is often similar to breakfast, and might consist of a hot milky drink with bread and honey/jam or brioches; other foods are also eaten, such as yogurt, gelato, granita, fruit salad (or just fruit), nuts, biscuits and cookies, cake, sweets, etc. (Source Wiki)
I baked three different cake recipes for the theme "Follow the Italian Meal Structure".
Updates
This recipe was first posted on my blog on 18th March 2019. Today the 4th August 2025, I am updating the recipe a bit. Content is also updated. Pics are not updated as the cupcakes were made by my son earlir. (Read above)
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Your son has done a wonderful job on these cupcakes. They look fantastic. Kudos to him.
Thank You 🙂
I totally get it why you would have had them warm. When it comes to chocolate, even I have no patience. Hehe... the cupcakes look fantastic, soft...
Thank You
These look delicious! What a genius recipe. So clever to have produced such a great chocolate cupcake that's practically healthy! Thank you so much for bringing them to #CookBlogShare.
Thank you
They look so yummy Renu! Your son has done really well. They are soo chocolatey and cakey, all-round chocolate cupcake heaven! Thank you for bringing these to #BakingCrumbs 🙂
Thank You
These cupcakes looks so moist and delicious.your son has done really well. Perfect treat for kids and my kids will definitely going to love this. Thanks for sharing Renu.
Thank You
Thanks for sharing at the What's for Dinner Party.
Thank You
They look absolutely tempting. Great job by the kiddo.
Thank You
Whole wheat cupcakes looks super delicious.
Thank you
Look at them! Soft and spongy , lovely texture ! Your son has done a wonderful job renu! Congratulate him on my behalf!
Chocolate Muffins look delicious and so beautifully baked.. cooking is always fun with kids and your kids must be well trained little baker now under mommy's guidance!!
Thank You
These look so delicious! So Chocolatey and moist. I am very keen to try this recipe .. and love that your 9 year old enjoys baking!
Thank You
Though I am not a vegan, from the time I have started vegan baking, I prefer it over normal baking. Vegan cakes and cookies taste much lighter and fresh. Will definitely try your healthier version of whole wheat chocolate cupcakes.
Thank You
These wholewheat chocolate cupcakes look so good, with a lovely crumb. I'm now yearning for some chocolate cupcake. A baker in the making??? Kids love baking and it can be so therapeutic for them. I'm so happy that your son enjoyed this activity.
Thank you. Yes he loves baking and specially measuring and mixing the ingredients.
How adorable Renu! Love what you are teaching your children and this will stay with them for a long time. I love baking with whole wheat as I am a big fan of the earthy texture and flavor. This whole wheat cupcakes with chocolate is a delicious combination and they have come out so well!
Thank You
love the texture of these cupcakes - and they look so chocolate rich too!
Thank You
A nice healthy recipe that I would surely try. If I want to use eggs instead of the flax eggs, how many do I use?
Thank You, You can use 3 eggs.
How many cupcakes does this recipe makes.I want to make this for thanksgiving for family .
Thanks
This will make approximately 12 cupcakes. Thanks
awww...those memories of baking with kids (and the backstory to the recipe) are always memorable, Renu. I love the way these eggless choco cupcakes have shaped up! yum and delish!
Your son has done a great job, and I do agree that kids should learn to cook. It is one of the great foundational courses! These cupcakes are perfect for the trip we are going on.
Thank You
Cup cakes looks so good. Your son has done a wonderful job. Kudos!